{"version": null, "code": "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", "rule": "mageck_count", "input": ["../../fastq/GSC_0131_Day0_Rep1.fastq.gz", "../../fastq/GSC_0131_Day0_Rep2.fastq.gz", "../../fastq/GSC_0131_Day23_Rep1.fastq.gz", "../../fastq/GSC_0131_Day23_Rep2.fastq.gz", "../library.csv"], "log": ["logs/mageck/count/all.log"], "params": ["''", "''", "'../../fastq/GSC_0131_Day0_Rep1.fastq.gz ../../fastq/GSC_0131_Day0_Rep2.fastq.gz ../../fastq/GSC_0131_Day23_Rep1.fastq.gz ../../fastq/GSC_0131_Day23_Rep2.fastq.gz'", "'GSC_0131_Day0_Rep1,GSC_0131_Day0_Rep2,GSC_0131_Day23_Rep1,Gsc_0131_Day23_Rep2'", "'median'", "'results/count/all'"], "shellcmd": "mageck count --output-prefix results/count/all --norm-method median --list-seq ../library.csv --fastq ../../fastq/GSC_0131_Day0_Rep1.fastq.gz ../../fastq/GSC_0131_Day0_Rep2.fastq.gz ../../fastq/GSC_0131_Day23_Rep1.fastq.gz ../../fastq/GSC_0131_Day23_Rep2.fastq.gz --sample-label GSC_0131_Day0_Rep1,GSC_0131_Day0_Rep2,GSC_0131_Day23_Rep1,Gsc_0131_Day23_Rep2   --trim-5 AUTO 2> logs/mageck/count/all.log", "incomplete": false}