NuclearReceptorCistrome

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Epigenome
Species Cell type Cell origin Factor Condition Reference Lab Download:WIG Download:BED Download:XLS
Human LnCaP prostate H3K4me2 vehicle Nucleosome dynamics define transcriptional enhancers. Nat Genet 2010 Apr 7;42(4):342-347. Myles Brown Download Download Download
Human LnCaP prostate H3K4me2 DHT(4hr) Nucleosome dynamics define transcriptional enhancers. Nat Genet 2010 Apr 7;42(4):342-347. Myles Brown Download Download Download
Human LnCaP prostate H3K4me2 DHT(16hr) Nucleosome dynamics define transcriptional enhancers. Nat Genet 2010 Apr 7;42(4):342-347. Myles Brown Download Download Download
Human LnCaP prostate H3K4me3 Vehicle Nucleosome dynamics define transcriptional enhancers. Nat Genet 2010 Apr 7;42(4):342-347. Myles Brown Download Download Download
Human LnCaP prostate H3K4me3 DHT(4hr) Nucleosome dynamics define transcriptional enhancers. Nat Genet 2010 Apr 7;42(4):342-347. Myles Brown Download Download Download
Human MCF-7 breast H3K4me1 No treatment FoxA1 translates epigenetic signatures into enhancer-driven lineage-specific transcription. Cell 2008 Mar;132:958-970. Myles Brown Download Download Download
Human MCF-7 breast H3R17me2 No treatment Coactivator function defines the active estrogen receptor alpha cistrome. Mol Cell Biol 2009 Jun;29(12):3413-23. Myles Brown Download Download Download
Human MCF-7 breast H3R17me2 E2(45min) Coactivator function defines the active estrogen receptor alpha cistrome. Mol Cell Biol 2009 Jun;29(12):3413-23. Myles Brown Download Download Download
Human MCF-7 breast H3K9ac No treatment Integrative genome-wide expression analysis bears evidence of estrogen receptor-independent transcription in heregulin-stimulated MCF-7 cells. PLoS One 2008 Mar 19;3(3):e1803. Myles Brown Download Download Download
Mouse bone marrow-derived macrophages hematopoietic stem cell H3K4me1 No treatment Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities. Mol Cell 2010 May 28;38(4):576-89. Christopher Glass Download Download Download
Mouse LXRa/b-/- bone marrow-derived macrophages hematopoietic stem cell H3K4me1 No treatment Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities. Mol Cell 2010 May 28;38(4):576-89. Christopher Glass Download Download Download
Mouse thioglycollate-elicited peritoneal macrophages hematopoietic stem cell H3K4me1 No treatment Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities. Mol Cell 2010 May 28;38(4):576-89. Christopher Glass Download Download Download
Mouse thioglycollate-elicited peritoneal macrophages hematopoietic stem cell H3K4me3 No treatment Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities. Mol Cell 2010 May 28;38(4):576-89. Christopher Glass Download Download Download
Mouse B cell hematopoietic stem cell H3K4me1 No treatment Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities. Mol Cell 2010 May 28;38(4):576-89. Christopher Glass Download Download Download
Mouse B cell hematopoietic stem cell H3K4me3 No treatment Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities. Mol Cell 2010 May 28;38(4):576-89. Christopher Glass Download Download Download
Mouse PUER cells hematopoietic stem cell H3K4me1 Tamoxifen(0hr) Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities. Mol Cell 2010 May 28;38(4):576-89. Christopher Glass Download Download Download
Mouse PUER cells hematopoietic stem cell H3K4me1 Tamoxifen(1hr) Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities. Mol Cell 2010 May 28;38(4):576-89. Christopher Glass Download Download Download
Mouse PUER cells hematopoietic stem cell H3K4me1 Tamoxifen(24hr) Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities. Mol Cell 2010 May 28;38(4):576-89. Christopher Glass Download Download Download
Mouse PU.1-/- myloid cell hematopoietic stem cell H3K4me1 No treatment Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities. Mol Cell 2010 May 28;38(4):576-89. Christopher Glass Download Download Download
Human NB4 cells hematopoietic stem cell H3K9K14ac No treatment PML-RARalpha/RXR alters the epigenetic landscape in acute promyelocytic leukemia. Cancer Cell 2010 Feb 17;17(2):173-85. Hendrik Stunnenberg Download Download Download
Human NB4 cells hematopoietic stem cell H3K9K14ac ATRA(24hr) PML-RARalpha/RXR alters the epigenetic landscape in acute promyelocytic leukemia. Cancer Cell 2010 Feb 17;17(2):173-85. Hendrik Stunnenberg Download Download Download
Human NB4 cells hematopoietic stem cell H3K27me3 No treatment PML-RARalpha/RXR alters the epigenetic landscape in acute promyelocytic leukemia. Cancer Cell 2010 Feb 17;17(2):173-85. Hendrik Stunnenberg Download Download Download
Human NB4 cells hematopoietic stem cell H3K27me3 ATRA(24hr) PML-RARalpha/RXR alters the epigenetic landscape in acute promyelocytic leukemia. Cancer Cell 2010 Feb 17;17(2):173-85. Hendrik Stunnenberg Download Download Download
Human NB4 cells hematopoietic stem cell H3K9me3 No treatment PML-RARalpha/RXR alters the epigenetic landscape in acute promyelocytic leukemia. Cancer Cell 2010 Feb 17;17(2):173-85. Hendrik Stunnenberg Download Download Download
Human NB4 cells hematopoietic stem cell H3K9me3 ATRA(24hr) PML-RARalpha/RXR alters the epigenetic landscape in acute promyelocytic leukemia. Cancer Cell 2010 Feb 17;17(2):173-85. Hendrik Stunnenberg Download Download Download
Human APL164 cells hematopoietic stem cell H3K9K14ac No treatment PML-RARalpha/RXR alters the epigenetic landscape in acute promyelocytic leukemia. Cancer Cell 2010 Feb 17;17(2):173-85. Hendrik Stunnenberg Download Download Download
Human APL164 cells hematopoietic stem cell H3K27me3 No treatment PML-RARalpha/RXR alters the epigenetic landscape in acute promyelocytic leukemia. Cancer Cell 2010 Feb 17;17(2):173-85. Hendrik Stunnenberg Download Download Download
Human APL164 cells hematopoietic stem cell H3K9K14ac ATRA(48hr) PML-RARalpha/RXR alters the epigenetic landscape in acute promyelocytic leukemia. Cancer Cell 2010 Feb 17;17(2):173-85. Hendrik Stunnenberg Download Download Download
Human APL164 cells hematopoietic stem cell H3K27me3 ATRA(48hr) PML-RARalpha/RXR alters the epigenetic landscape in acute promyelocytic leukemia. Cancer Cell 2010 Feb 17;17(2):173-85. Hendrik Stunnenberg Download Download Download
Human MR4 cells hematopoietic stem cell H3K9me3 No treatment PML-RARalpha/RXR alters the epigenetic landscape in acute promyelocytic leukemia. Cancer Cell 2010 Feb 17;17(2):173-85. Hendrik Stunnenberg Download Download Download
Human MR4 cells hematopoietic stem cell H3K9K14ac ATRA(24hr) PML-RARalpha/RXR alters the epigenetic landscape in acute promyelocytic leukemia. Cancer Cell 2010 Feb 17;17(2):173-85. Hendrik Stunnenberg Download Download Download
Human UPR9 cells hematopoietic stem cell H3K9K14ac Zinc(5hr) PML-RARalpha/RXR alters the epigenetic landscape in acute promyelocytic leukemia. Cancer Cell 2010 Feb 17;17(2):173-85. Hendrik Stunnenberg Download Download Download
Human UPR9 cells hematopoietic stem cell H3K9K14ac No treatment PML-RARalpha/RXR alters the epigenetic landscape in acute promyelocytic leukemia. Cancer Cell 2010 Feb 17;17(2):173-85. Hendrik Stunnenberg Download Download Download
Human UPR9 cells hematopoietic stem cell H3K27me3 No treatment PML-RARalpha/RXR alters the epigenetic landscape in acute promyelocytic leukemia. Cancer Cell 2010 Feb 17;17(2):173-85. Hendrik Stunnenberg Download Download Download
Human UPR9 cells hematopoietic stem cell H3K27me3 Zinc(5hr) PML-RARalpha/RXR alters the epigenetic landscape in acute promyelocytic leukemia. Cancer Cell 2010 Feb 17;17(2):173-85. Hendrik Stunnenberg Download Download Download
Human VCaP prostate H3K9me3 EtOH(16hr) An integrated network of androgen receptor, polycomb, and TMPRSS2-ERG gene fusions in prostate cancer progression. Cancer Cell 2010 May 18;17(5):443-454. Arul Chinnaiyan Download Download Download
Human VCaP prostate H3K9me3 R1881(16hr) An integrated network of androgen receptor, polycomb, and TMPRSS2-ERG gene fusions in prostate cancer progression. Cancer Cell 2010 May 18;17(5):443-454. Arul Chinnaiyan Download Download Download
Human VCaP prostate H3K4me3 EtOH(16hr) An integrated network of androgen receptor, polycomb, and TMPRSS2-ERG gene fusions in prostate cancer progression. Cancer Cell 2010 May 18;17(5):443-454. Arul Chinnaiyan Download Download Download
Human VCaP prostate H3K4me3 R1881(16hr) An integrated network of androgen receptor, polycomb, and TMPRSS2-ERG gene fusions in prostate cancer progression. Cancer Cell 2010 May 18;17(5):443-454. Arul Chinnaiyan Download Download Download
Human VCaP prostate H3K27me3 EtOH(16hr) An integrated network of androgen receptor, polycomb, and TMPRSS2-ERG gene fusions in prostate cancer progression. Cancer Cell 2010 May 18;17(5):443-454. Arul Chinnaiyan Download Download Download
Human VCaP prostate H3K27me3 R1881(16hr) An integrated network of androgen receptor, polycomb, and TMPRSS2-ERG gene fusions in prostate cancer progression. Cancer Cell 2010 May 18;17(5):443-454. Arul Chinnaiyan Download Download Download
Human VCaP prostate H3K9me3 regular medium An integrated network of androgen receptor, polycomb, and TMPRSS2-ERG gene fusions in prostate cancer progression. Cancer Cell 2010 May 18;17(5):443-454. Arul Chinnaiyan Download Download Download
Human VCaP prostate H3K4me3 regular medium An integrated network of androgen receptor, polycomb, and TMPRSS2-ERG gene fusions in prostate cancer progression. Cancer Cell 2010 May 18;17(5):443-454. Arul Chinnaiyan Download Download Download
Human VCaP prostate H3K27me3 regular medium An integrated network of androgen receptor, polycomb, and TMPRSS2-ERG gene fusions in prostate cancer progression. Cancer Cell 2010 May 18;17(5):443-454. Arul Chinnaiyan Download Download Download
Human VCaP prostate Pan-H3 regular medium An integrated network of androgen receptor, polycomb, and TMPRSS2-ERG gene fusions in prostate cancer progression. Cancer Cell 2010 May 18;17(5):443-454. Arul Chinnaiyan Download Download Download
Human VCaP prostate H3K36me3 regular medium An integrated network of androgen receptor, polycomb, and TMPRSS2-ERG gene fusions in prostate cancer progression. Cancer Cell 2010 May 18;17(5):443-454. Arul Chinnaiyan Download Download Download
Human VCaP prostate Ace_H3 regular medium An integrated network of androgen receptor, polycomb, and TMPRSS2-ERG gene fusions in prostate cancer progression. Cancer Cell 2010 May 18;17(5):443-454. Arul Chinnaiyan Download Download Download
Human VCaP prostate H3K4me1 regular medium An integrated network of androgen receptor, polycomb, and TMPRSS2-ERG gene fusions in prostate cancer progression. Cancer Cell 2010 May 18;17(5):443-454. Arul Chinnaiyan Download Download Download
Human VCaP prostate H3K4me2 regular medium An integrated network of androgen receptor, polycomb, and TMPRSS2-ERG gene fusions in prostate cancer progression. Cancer Cell 2010 May 18;17(5):443-454. Arul Chinnaiyan Download Download Download
Human LnCaP prostate H3K9me3 EtOH(16hr) An integrated network of androgen receptor, polycomb, and TMPRSS2-ERG gene fusions in prostate cancer progression. Cancer Cell 2010 May 18;17(5):443-454. Arul Chinnaiyan Download Download Download
Human LnCaP prostate H3K9me3 R1881(16hr) An integrated network of androgen receptor, polycomb, and TMPRSS2-ERG gene fusions in prostate cancer progression. Cancer Cell 2010 May 18;17(5):443-454. Arul Chinnaiyan Download Download Download
Human LnCaP prostate H3K27me3 EtOH(16hr) An integrated network of androgen receptor, polycomb, and TMPRSS2-ERG gene fusions in prostate cancer progression. Cancer Cell 2010 May 18;17(5):443-454. Arul Chinnaiyan Download Download Download
Human LnCaP prostate H3K27me3 R1881(16hr) An integrated network of androgen receptor, polycomb, and TMPRSS2-ERG gene fusions in prostate cancer progression. Cancer Cell 2010 May 18;17(5):443-454. Arul Chinnaiyan Download Download Download
Human LnCaP prostate H3K4me3 EtOH(16hr) An integrated network of androgen receptor, polycomb, and TMPRSS2-ERG gene fusions in prostate cancer progression. Cancer Cell 2010 May 18;17(5):443-454. Arul Chinnaiyan Download Download Download
Human CS57.LnCaP prostate H3K4me3 EtOH(16hr) An integrated network of androgen receptor, polycomb, and TMPRSS2-ERG gene fusions in prostate cancer progression. Cancer Cell 2010 May 18;17(5):443-454. Arul Chinnaiyan Download Download Download
Human LnCaP prostate H3K4me3 R1881(16hr) An integrated network of androgen receptor, polycomb, and TMPRSS2-ERG gene fusions in prostate cancer progression. Cancer Cell 2010 May 18;17(5):443-454. Arul Chinnaiyan Download Download Download
Human CS58.LnCaP prostate H3K4me3 R1881(16hr) An integrated network of androgen receptor, polycomb, and TMPRSS2-ERG gene fusions in prostate cancer progression. Cancer Cell 2010 May 18;17(5):443-454. Arul Chinnaiyan Download Download Download
Human LnCaP prostate H3K9me3 regular medium An integrated network of androgen receptor, polycomb, and TMPRSS2-ERG gene fusions in prostate cancer progression. Cancer Cell 2010 May 18;17(5):443-454. Arul Chinnaiyan Download Download Download
Human LnCaP prostate H3K4me3 regular medium An integrated network of androgen receptor, polycomb, and TMPRSS2-ERG gene fusions in prostate cancer progression. Cancer Cell 2010 May 18;17(5):443-454. Arul Chinnaiyan Download Download Download
Human LnCaP prostate H3K36me3 regular medium An integrated network of androgen receptor, polycomb, and TMPRSS2-ERG gene fusions in prostate cancer progression. Cancer Cell 2010 May 18;17(5):443-454. Arul Chinnaiyan Download Download Download
Human LnCaP prostate Ace_H3 regular medium An integrated network of androgen receptor, polycomb, and TMPRSS2-ERG gene fusions in prostate cancer progression. Cancer Cell 2010 May 18;17(5):443-454. Arul Chinnaiyan Download Download Download
Human LnCaP prostate H3K4me1 regular medium An integrated network of androgen receptor, polycomb, and TMPRSS2-ERG gene fusions in prostate cancer progression. Cancer Cell 2010 May 18;17(5):443-454. Arul Chinnaiyan Download Download Download
Human LnCaP prostate H3K4me2 regular medium An integrated network of androgen receptor, polycomb, and TMPRSS2-ERG gene fusions in prostate cancer progression. Cancer Cell 2010 May 18;17(5):443-454. Arul Chinnaiyan Download Download Download
Human metastatic prostate cancer tissue prostate H3K4me3 No treatment An integrated network of androgen receptor, polycomb, and TMPRSS2-ERG gene fusions in prostate cancer progression. Cancer Cell 2010 May 18;17(5):443-454. Arul Chinnaiyan Download Download Download
Human metastatic prostate cancer tissue prostate H3K9me3 No treatment An integrated network of androgen receptor, polycomb, and TMPRSS2-ERG gene fusions in prostate cancer progression. Cancer Cell 2010 May 18;17(5):443-454. Arul Chinnaiyan Download Download Download
Human metastatic prostate cancer tissue prostate H3K27me3 No treatment An integrated network of androgen receptor, polycomb, and TMPRSS2-ERG gene fusions in prostate cancer progression. Cancer Cell 2010 May 18;17(5):443-454. Arul Chinnaiyan Download Download Download
Mouse 3T3-L1 adipocytes adipocytes H3K9ac No treatment Cell-specific determinants of peroxisome proliferator-activated receptor gamma function in adipocytes and macrophages. Mol Cell Biol 2010 May;30(9):2078-89. Mitch Lazar Download Download Download
Mouse 3T3-L1 cells pre-adipocytes H3K9ac IBMX-DX-Insulin(0hr) Propagation of adipogenic signals through an epigenomic transition state. Genes Dev 2010 May 15;24(10):1035-44. Mitch Lazar Download Download Download
Mouse 3T3-L1 cells pre-adipocytes H3K9ac IBMX-DX-Insulin(24hr) Propagation of adipogenic signals through an epigenomic transition state. Genes Dev 2010 May 15;24(10):1035-44. Mitch Lazar Download Download Download
Mouse 3T3-L1 cells pre-adipocytes H3K9ac IBMX-DX-Insulin(240hr) Propagation of adipogenic signals through an epigenomic transition state. Genes Dev 2010 May 15;24(10):1035-44. Mitch Lazar Download Download Download
Mouse liver cells liver H3K4me1 No treatment Locus co-occupancy, nucleosome positioning, and H3K4me1 regulate the functionality of FOXA2-, HNF4A-, and PDX1-bound loci in islets and liver. Genome Res 2010 Sep 30;20:1037-1051. Pamela Hoodless Download Download Download
Mouse islet cells islet H3K4me1 No treatment Locus co-occupancy, nucleosome positioning, and H3K4me1 regulate the functionality of FOXA2-, HNF4A-, and PDX1-bound loci in islets and liver. Genome Res 2010 Sep 30;20:1037-1051. Pamela Hoodless Download Download Download
Mouse liver cells liver H3K4me3 No treatment Locus co-occupancy, nucleosome positioning, and H3K4me1 regulate the functionality of FOXA2-, HNF4A-, and PDX1-bound loci in islets and liver. Genome Res 2010 Sep 30;20:1037-1051. Pamela Hoodless Download Download Download
Mouse islet cells islet H3K4me3 No treatment Locus co-occupancy, nucleosome positioning, and H3K4me1 regulate the functionality of FOXA2-, HNF4A-, and PDX1-bound loci in islets and liver. Genome Res 2010 Sep 30;20:1037-1051. Pamela Hoodless Download Download Download
Mouse thioglycollate-elicited peritoneal macrophages hematopoietic stem cell H3K9ac No treatment Cell-specific determinants of peroxisome proliferator-activated receptor gamma function in adipocytes and macrophages. Mol Cell Biol 2010 May;30(9):2078-89. Mitch Lazar Download Download Download
Human MCF-7 breast H3K4me2 EtOH(6hr) TRIM24 links a non-canonical histone signature to breast cancer. Nature 2010 Dec 16;468(7326):927-32. Michelle Barton Download Download Download
Human MCF-7 breast H3K4me2 E2(6hr) TRIM24 links a non-canonical histone signature to breast cancer. Nature 2010 Dec 16;468(7326):927-32. Michelle Barton Download Download Download
Human Caco-2(proliferating) intestine H3K4me2 No treatment Differentiation-specific histone modifications reveal dynamic chromatin interactions and partners for the intestinal transcription factor CDX2. Dev Cell 2010 Nov 16;19(5):713-26. Ramesh Shivdasani Download Download Download
Human Caco-2(differentiated) intestine H3K4me2 No treatment Differentiation-specific histone modifications reveal dynamic chromatin interactions and partners for the intestinal transcription factor CDX2. Dev Cell 2010 Nov 16;19(5):713-26. Ramesh Shivdasani Download Download Download
Human MCF-7 breast H3K27me3 E2(3hr) Integrative model of genomic factors for determining binding site selection by estrogen receptor-a. Mol Syst Biol 2010 Dec 21;6:456. Edison Liu Download Download Download
Human MCF-7 breast H3K27me3 DMSO(3hr) Integrative model of genomic factors for determining binding site selection by estrogen receptor-a. Mol Syst Biol 2010 Dec 21;6:456. Edison Liu Download Download Download
Human MCF-7 breast H3K9me3 E2(3hr) Integrative model of genomic factors for determining binding site selection by estrogen receptor-a. Mol Syst Biol 2010 Dec 21;6:456. Edison Liu Download Download Download
Human MCF-7 breast H3K9me3 DMSO(3hr) Integrative model of genomic factors for determining binding site selection by estrogen receptor-a. Mol Syst Biol 2010 Dec 21;6:456. Edison Liu Download Download Download
Human MCF-7 breast H3K4me1 E2(3hr) Integrative model of genomic factors for determining binding site selection by estrogen receptor-a. Mol Syst Biol 2010 Dec 21;6:456. Edison Liu Download Download Download
Human MCF-7 breast H3K4me1 DMSO(3hr) Integrative model of genomic factors for determining binding site selection by estrogen receptor-a. Mol Syst Biol 2010 Dec 21;6:456. Edison Liu Download Download Download
Human MCF-7 breast H3K4me3 E2(3hr) Integrative model of genomic factors for determining binding site selection by estrogen receptor-a. Mol Syst Biol 2010 Dec 21;6:456. Edison Liu Download Download Download
Human MCF-7 breast H3K4me3 DMSO(3hr) Integrative model of genomic factors for determining binding site selection by estrogen receptor-a. Mol Syst Biol 2010 Dec 21;6:456. Edison Liu Download Download Download
Human MCF-7 breast H3K9ac E2(3hr) Integrative model of genomic factors for determining binding site selection by estrogen receptor-a. Mol Syst Biol 2010 Dec 21;6:456. Edison Liu Download Download Download
Human MCF-7 breast H3K9ac DMSO(3hr) Integrative model of genomic factors for determining binding site selection by estrogen receptor-a. Mol Syst Biol 2010 Dec 21;6:456. Edison Liu Download Download Download
Human MCF-7 breast H3K14ac E2(3hr) Integrative model of genomic factors for determining binding site selection by estrogen receptor-a. Mol Syst Biol 2010 Dec 21;6:456. Edison Liu Download Download Download
Human MCF-7 breast H3K14ac DMSO(3hr) Integrative model of genomic factors for determining binding site selection by estrogen receptor-a. Mol Syst Biol 2010 Dec 21;6:456. Edison Liu Download Download Download
Human T47D breast H3K4me1 E2(45min-3hr) Integrative model of genomic factors for determining binding site selection by estrogen receptor-a. Mol Syst Biol 2010 Dec 21;6:456. Edison Liu Download Download Download
Human T47D breast H3K4me1 DMSO(45min-3hr) Integrative model of genomic factors for determining binding site selection by estrogen receptor-a. Mol Syst Biol 2010 Dec 21;6:456. Edison Liu Download Download Download
Human MCF-7 breast H3K4me3 E2(45min) An oestrogen-receptor-alpha-bound human chromatin interactome. Nature 2009 Nov 5;462(7269):58-64. Yijun Ruan Download Download Download