Tips

● Check what factors regulate your gene of interest, what factors bind in your interval or have a significant binding overlap with your peak set. Have a try at CistromeDB Toolkit.

● If you have a Transcription Factor ChIP-seq (and TF perturbed expression) data, Cistrome-GO help you predict the function of this TF.

● Please help us curate the samples which has incorrect meta-data annotation by clicking the button on the inspector page. Thank you!

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Results

Batch Species Biological Source Factor Publication Quality Control
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Inspector

Title:
Treatment
ID:

GEO or ENCODE:

CistromeDB:

Species:
Citation:
PMID:
Factor:
Biological Source:

Cell Line:

Cell Type:

Cell Pop:

Strain:

Tissue:

Disease:

Meta-data Correction

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Quality Control
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Putative Targets

Tools

QC Sample
Raw sequence median quality score
% Reads uniquely mapped
PCR bottleneck coefficient (PBC)
Number of merged Total/Fold 10/Fold 20 peaks
Number of Total/Fold 10/Fold 20 peaks in each replicate
Fraction of reads in peaks (FRiP)
Number of overlapping peaks
Wiggle correlation coefficient
% Peaks in promoter/exon/intron/intergenic
% Top 5k peaks overlapping with union DHS
% Top 5k peaks Phastcon Conservation Profiles
Gene Score Coordinate Visualize
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Species Biological Source Factor Publication Score
Gene Score Coordinate Visualize
WashU UCSC